Extension of the voronoicell_base class to represent a Voronoi cell with neighbor information. More...

#include <cell.hh>

Inheritance diagram for voro::voronoicell_neighbor:

Public Member Functions
	voronoicell_neighbor ()

	~voronoicell_neighbor ()

void	operator= (voronoicell &c)

void	operator= (voronoicell_neighbor &c)

bool	nplane (double x, double y, double z, double rsq, int p_id)

bool	nplane (double x, double y, double z, int p_id)

bool	plane (double x, double y, double z, double rsq)

bool	plane (double x, double y, double z)

void	init (double xmin, double xmax, double ymin, double ymax, double zmin, double zmax)

void	init_octahedron (double l)

void	init_tetrahedron (double x0, double y0, double z0, double x1, double y1, double z1, double x2, double y2, double z2, double x3, double y3, double z3)

void	check_facets ()

virtual void	neighbors (std::vector< int > &v)

virtual void	print_edges_neighbors (int i)

virtual void	output_neighbors (FILE *fp=stdout)

Public Member Functions inherited from voro::voronoicell_base
	voronoicell_base ()

	~voronoicell_base ()

void	init_base (double xmin, double xmax, double ymin, double ymax, double zmin, double zmax)

void	init_octahedron_base (double l)

void	init_tetrahedron_base (double x0, double y0, double z0, double x1, double y1, double z1, double x2, double y2, double z2, double x3, double y3, double z3)

void	translate (double x, double y, double z)

void	draw_pov (double x, double y, double z, FILE *fp=stdout)

void	draw_pov (double x, double y, double z, const char *filename)

void	draw_pov_mesh (double x, double y, double z, FILE *fp=stdout)

void	draw_pov_mesh (double x, double y, double z, const char *filename)

void	draw_gnuplot (double x, double y, double z, FILE *fp=stdout)

void	draw_gnuplot (double x, double y, double z, const char *filename)

double	volume ()

double	max_radius_squared ()

double	total_edge_distance ()

double	surface_area ()

void	centroid (double &cx, double &cy, double &cz)

int	number_of_faces ()

int	number_of_edges ()

void	vertex_orders (std::vector< int > &v)

void	output_vertex_orders (FILE *fp=stdout)

void	vertices (std::vector< double > &v)

void	output_vertices (FILE *fp=stdout)

void	vertices (double x, double y, double z, std::vector< double > &v)

void	output_vertices (double x, double y, double z, FILE *fp=stdout)

void	face_areas (std::vector< double > &v)

void	output_face_areas (FILE *fp=stdout)

void	face_orders (std::vector< int > &v)

void	output_face_orders (FILE *fp=stdout)

void	face_freq_table (std::vector< int > &v)

void	output_face_freq_table (FILE *fp=stdout)

void	face_vertices (std::vector< int > &v)

void	output_face_vertices (FILE *fp=stdout)

void	face_perimeters (std::vector< double > &v)

void	output_face_perimeters (FILE *fp=stdout)

void	normals (std::vector< double > &v)

void	output_normals (FILE *fp=stdout)

void	output_custom (const char format, FILE fp=stdout)

void	output_custom (const char format, int i, double x, double y, double z, double r, FILE fp=stdout)

template<class vc_class >
bool	nplane (vc_class &vc, double x, double y, double z, double rsq, int p_id)

bool	plane_intersects (double x, double y, double z, double rsq)

bool	plane_intersects_guess (double x, double y, double z, double rsq)

void	construct_relations ()

void	check_relations ()

void	check_duplicates ()

void	print_edges ()

int	cycle_up (int a, int p)

int	cycle_down (int a, int p)

Data Fields
int **	mne

int **	ne

Data Fields inherited from voro::voronoicell_base
int	current_vertices

int	current_vertex_order

int	current_delete_size

int	current_delete2_size

int	p

int	up

int **	ed

int *	nu

double *	pts

Friends
class	voronoicell_base

Additional Inherited Members
Protected Member Functions inherited from voro::voronoicell_base
void	reset_edges ()

template<class vc_class >
void	check_memory_for_copy (vc_class &vc, voronoicell_base *vb)

void	copy (voronoicell_base *vb)

Protected Attributes inherited from voro::voronoicell_base
int *	mem

int *	mec

int **	mep

Detailed Description

This class is an extension of the voronoicell_base class, in cases when the IDs of neighboring particles associated with each face of the Voronoi cell. It contains additional data structures mne and ne for storing this information.

Definition at line 403 of file cell.hh.

Constructor & Destructor Documentation

voro::voronoicell_neighbor::voronoicell_neighbor ( )

The class constructor allocates memory for storing neighbor information.

Definition at line 2180 of file cell.cc.

voro::voronoicell_neighbor::~voronoicell_neighbor ( )

The class destructor frees the dynamically allocated memory for storing neighbor information.

Definition at line 2191 of file cell.cc.

Member Function Documentation

void voro::voronoicell_neighbor::check_facets ( )

This routine checks to make sure the neighbor information of each face is consistent.

Definition at line 2159 of file cell.cc.

void voro::voronoicell_neighbor::init	(	double	xmin,
		double	xmax,
		double	ymin,
		double	ymax,
		double	zmin,
		double	zmax
	)

This initializes the class to be a rectangular box. It calls the base class initialization routine to set up the edge and vertex information, and then sets up the neighbor information, with initial faces being assigned ID numbers from -1 to -6.

Parameters

[in]	(xmin,xmax)	the minimum and maximum x coordinates.
[in]	(ymin,ymax)	the minimum and maximum y coordinates.
[in]	(zmin,zmax)	the minimum and maximum z coordinates.

Definition at line 2105 of file cell.cc.

void voro::voronoicell_neighbor::init_octahedron ( double l )

This initializes the class to be an octahedron. It calls the base class initialization routine to set up the edge and vertex information, and then sets up the neighbor information, with the initial faces being assigned ID numbers from -1 to -8.

Parameters

[in] l The distance from the octahedron center to a vertex. Six vertices are initialized at (-l,0,0), (l,0,0), (0,-l,0), (0,l,0), (0,0,-l), and (0,0,l).

Definition at line 2127 of file cell.cc.

void voro::voronoicell_neighbor::init_tetrahedron	(	double	x0,
		double	y0,
		double	z0,
		double	x1,
		double	y1,
		double	z1,
		double	x2,
		double	y2,
		double	z2,
		double	x3,
		double	y3,
		double	z3
	)

This initializes the class to be a tetrahedron. It calls the base class initialization routine to set up the edge and vertex information, and then sets up the neighbor information, with the initial faces being assigned ID numbers from -1 to -4.

Parameters

(x0,y0,z0)	a position vector for the first vertex.
(x1,y1,z1)	a position vector for the second vertex.
(x2,y2,z2)	a position vector for the third vertex.
(x3,y3,z3)	a position vector for the fourth vertex.

Definition at line 2147 of file cell.cc.

void voro::voronoicell_neighbor::neighbors ( std::vector< int > & v )

virtual

Computes a vector list of neighbors.

Reimplemented from voro::voronoicell_base.

Definition at line 2198 of file cell.cc.

bool voro::voronoicell_neighbor::nplane	(	double	x,
		double	y,
		double	z,
		double	rsq,
		int	p_id
	)

inline

Cuts the Voronoi cell by a particle whose center is at a separation of (x,y,z) from the cell center. The value of rsq should be initially set to $x^2+y^2+z^2$ .

Parameters

[in]	(x,y,z)	the normal vector to the plane.
[in]	rsq	the distance along this vector of the plane.
[in]	p_id	the plane ID (for neighbor tracking only).

Returns: False if the plane cut deleted the cell entirely, true otherwise.

Definition at line 430 of file cell.hh.

bool voro::voronoicell_neighbor::nplane	(	double	x,
		double	y,
		double	z,
		int	p_id
	)

inline

This routine calculates the modulus squared of the vector before passing it to the main nplane() routine with full arguments.

Parameters

[in]	(x,y,z)	the vector to cut the cell by.
[in]	p_id	the plane ID (for neighbor tracking only).

Returns: False if the plane cut deleted the cell entirely, true otherwise.

Definition at line 440 of file cell.hh.

void voro::voronoicell_neighbor::operator= ( voronoicell & c )

Copies the information from another voronoicell class into this class, extending memory allocation if necessary.

Parameters

[in] c the class to copy.

Definition at line 80 of file cell.cc.

void voro::voronoicell_neighbor::operator= ( voronoicell_neighbor & c )

Copies the information from another voronoicell_neighbor class into this class, extending memory allocation if necessary.

Parameters

[in] c the class to copy.

Definition at line 93 of file cell.cc.

virtual void voro::voronoicell_neighbor::output_neighbors ( FILE * fp = stdout )

inlinevirtual

This is a virtual function that is overridden by a routine to print a list of IDs of neighboring particles corresponding to each face. By default, when no neighbor information is available, the routine does nothing.

Parameters

[in] fp the file handle to write to.

Reimplemented from voro::voronoicell_base.

Definition at line 472 of file cell.hh.

bool voro::voronoicell_neighbor::plane	(	double	x,
		double	y,
		double	z,
		double	rsq
	)

inline

This version of the plane routine just makes up the plane ID to be zero. It will only be referenced if neighbor tracking is enabled.

Parameters

[in]	(x,y,z)	the vector to cut the cell by.
[in]	rsq	the modulus squared of the vector.

Returns: False if the plane cut deleted the cell entirely, true otherwise.

Definition at line 451 of file cell.hh.

bool voro::voronoicell_neighbor::plane	(	double	x,
		double	y,
		double	z
	)

inline

Cuts a Voronoi cell using the influence of a particle at (x,y,z), first calculating the modulus squared of this vector before passing it to the main nplane() routine. Zero is supplied as the plane ID, which will be ignored unless neighbor tracking is enabled.

Parameters

[in] (x,y,z) the vector to cut the cell by.

Returns: False if the plane cut deleted the cell entirely, true otherwise.

Definition at line 462 of file cell.hh.

void voro::voronoicell_neighbor::print_edges_neighbors ( int i )

virtual

This prints out the neighbor information for vertex i.

Reimplemented from voro::voronoicell_base.

Definition at line 2237 of file cell.cc.

Field Documentation

int** voro::voronoicell_neighbor::mne

This two dimensional array holds the neighbor information associated with each vertex. mne[p] is a one dimensional array which holds all of the neighbor information for vertices of order p.

Definition at line 410 of file cell.hh.

int** voro::voronoicell_neighbor::ne

This is a two dimensional array that holds the neighbor information associated with each vertex. ne[i] points to a one-dimensional array in mne[nu[i]]. ne[i][j] holds the neighbor information associated with the jth edge of vertex i. It is set to the ID number of the plane that made the face that is clockwise from the jth edge.

Definition at line 417 of file cell.hh.

The documentation for this class was generated from the following files:

Public Member Functions

Data Fields

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Field Documentation